PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01159.1.p
Common NameEUGRSUZ_A01159
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 442aa    MW: 47935.8 Da    PI: 10.1187
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01159.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05628123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F r  nL+ H r H
  Eucgr.A01159.1.p  6 FVCEICNKGFQRDQNLQLHRRGH 28
                      89*******************88 PP

2zf-C2H2130.0003282104123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k +  +s+ k H +t+
  Eucgr.A01159.1.p  82 WKCEKCSKKYAVQSDWKAHSKTC 104
                       58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.62E-7528No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.017628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949628IPR007087Zinc finger, C2H2
PfamPF121716.8E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551004777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.62E-777102No hitNo description
SMARTSM0035514082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSKE IVKKKVYICP EKTCVHHDPS  60
RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK  120
DSFITHRAFC DALAEESARF SSVSSTNLNF ANNAMNETTI GAHSNLPPHG FSNNRGVQDI  180
TGVSLTTLQQ KSRMSQWINP ANPALNPSDI LSSNPNLTCL SEMVQIGNAS GNNLFGSSPM  240
SNFGSNKQFS AFEKTNLTLS AFRQGLKDQA GSNKGNLFGA PPSLYSDSQT KPSAALMSAT  300
ALLQKAAQMG SSRSNPGSLF KESFGVMSSS SSSNTTAFNV LGQSQNDLPS QFINQSMMSK  360
QQESFGAPVG GMNNLSDSVP NLSPSMTRPT TTTTNSLELN ATRDFLGMSG GAGGPPFSPQ  420
EFAKFASMSS AMGFSQFVGN N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01159.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046700.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ700D21e-112IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLA0A059DEI70.0A0A059DEI7_EUCGR; Uncharacterized protein
STRINGVIT_08s0040g02100.t011e-160(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.15e-99C2H2-like zinc finger protein